Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein ompa | SAMN04488036_106178 | Not Available | Positive | 900664 - 901275 | 21607.0 |
| caspase domain-containing protein | SAMN04488036_106179 | Not Available | Positive | 901325 - 902044 | 24610.6 |
| glycosyl hydrolases family 16 | SAMN04488036_106180 | Not Available | Negative | 902007 - 902753 | 28098.8 |
| putative peptidoglycan binding domain-containing protein | SAMN04488036_106181 | Not Available | Positive | 902969 - 904213 | 44901.4 |
| outer membrane protein ompa | SAMN04488036_106182 | Not Available | Negative | 904279 - 904806 | 19141.7 |
| surface polysaccharide o-acyltransferase, integral membrane enzyme | SAMN04488036_106183 | Not Available | Positive | 904967 - 906112 | 43163.9 |
| mannose-1-phosphate guanylyltransferase | SAMN04488036_106184 | Not Available | Positive | 906123 - 907616 | 53442.0 |
| hypothetical protein | SAMN04488036_106185 | Not Available | Positive | 907613 - 908374 | 27886.1 |
| cellulose synthase (udp-forming) | SAMN04488036_106186 | Not Available | Positive | 908411 - 910225 | 68161.2 |
| protein of unknown function | SAMN04488036_106187 | Not Available | Positive | 910200 - 911504 | 47351.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
