Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_106168 | Not Available | Positive | 887031 - 887522 | 17345.3 |
| nosr/niri family transcriptional regulator, nitrous oxide reductase regulator | SAMN04488036_106169 | Not Available | Positive | 887519 - 889705 | 80835.3 |
| nitrous oxide reductase apoprotein | SAMN04488036_106170 | Not Available | Positive | 889724 - 891637 | 70492.0 |
| nitrous oxidase accessory protein | SAMN04488036_106171 | Not Available | Positive | 891639 - 892901 | 45469.3 |
| cu-processing system atp-binding protein | SAMN04488036_106172 | Not Available | Positive | 892891 - 893787 | 31665.5 |
| cu-processing system permease protein | SAMN04488036_106173 | Not Available | Positive | 893784 - 894605 | 28203.2 |
| copper chaperone nosl | SAMN04488036_106174 | Not Available | Positive | 894602 - 895126 | 18323.7 |
| thiamine biosynthesis lipoprotein | SAMN04488036_106175 | Not Available | Positive | 895123 - 896013 | 30974.4 |
| dimethylglycine dehydrogenase | SAMN04488036_106176 | Not Available | Positive | 896121 - 898556 | 88742.6 |
| dihydroxy-acid dehydratase | SAMN04488036_106177 | Not Available | Positive | 898760 - 900556 | 64923.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
