Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN04488036_106158 | Not Available | Negative | 876849 - 877847 | 36419.7 |
| predicted dehydrogenase | SAMN04488036_106159 | Not Available | Negative | 877844 - 878878 | 37347.2 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN04488036_106160 | Not Available | Negative | 878875 - 879714 | 30922.9 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN04488036_106161 | Not Available | Negative | 879725 - 880639 | 34415.1 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN04488036_106162 | Not Available | Negative | 880707 - 881960 | 45019.3 |
| n-acetylmuramic acid 6-phosphate etherase | SAMN04488036_106163 | Not Available | Negative | 881989 - 882933 | 32119.6 |
| glucosamine kinase | SAMN04488036_106164 | Not Available | Positive | 883026 - 883913 | 30039.0 |
| transcriptional regulator, gntr family | SAMN04488036_106165 | Not Available | Positive | 883900 - 884655 | 27732.2 |
| glutamine--fructose-6-phosphate transaminase | SAMN04488036_106166 | Not Available | Positive | 884682 - 885713 | 35952.9 |
| n-acetylglucosamine 6-phosphate deacetylase | SAMN04488036_106167 | Not Available | Positive | 885710 - 886849 | 38781.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
