Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, gntr family | SAMN04488036_106148 | Not Available | Negative | 866437 - 867120 | 25360.4 |
| amino acid synthesis | SAMN04488036_106149 | Not Available | Positive | 867220 - 867822 | 21160.3 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488036_106150 | Not Available | Positive | 867794 - 868606 | 28153.5 |
| nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) family | SAMN04488036_106151 | Not Available | Positive | 868603 - 869514 | 31907.7 |
| flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ssud and methylene tetrahydromethanopterin reductase) | SAMN04488036_106152 | Not Available | Positive | 869532 - 870569 | 38934.0 |
| aldehyde dehydrogenase (nad+) | SAMN04488036_106153 | Not Available | Positive | 870580 - 872046 | 51873.7 |
| nitrate reductase nape | SAMN04488036_106154 | Not Available | Positive | 872219 - 872392 | 6244.61 |
| trimethylamine-n-oxide reductase (cytochrome c), cytochrome c-type subunit torc | SAMN04488036_106155 | Not Available | Positive | 872457 - 873641 | 43696.9 |
| trimethylamine-n-oxide reductase (cytochrome c) | SAMN04488036_106156 | Not Available | Positive | 873652 - 876117 | 91632.8 |
| tora specific chaperone | SAMN04488036_106157 | Not Available | Positive | 876118 - 876735 | 22291.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
