Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xanthine dehydrogenase, molybdenum binding subunit apoprotein | SAMN04488036_106138 | Not Available | Negative | 852462 - 854786 | 84446.7 |
| xanthine dehydrogenase small subunit | SAMN04488036_106139 | Not Available | Negative | 854798 - 856255 | 52684.5 |
| ornithine cyclodeaminase | SAMN04488036_106140 | Not Available | Negative | 856721 - 857686 | 33865.4 |
| 3-hydroxy-d-aspartate aldolase | SAMN04488036_106141 | Not Available | Negative | 857798 - 858961 | 41787.7 |
| threonine dehydratase | SAMN04488036_106142 | Not Available | Negative | 859015 - 859971 | 34360.0 |
| serine-glyoxylate aminotransferase apoenzyme | SAMN04488036_106143 | Not Available | Negative | 859988 - 861178 | 41957.1 |
| transcriptional regulator, iclr family | SAMN04488036_106144 | Not Available | Positive | 861349 - 862188 | 30785.7 |
| hupe / urej protein | SAMN04488036_106145 | Not Available | Negative | 862230 - 863219 | 35540.5 |
| ppic-type ppiase domain-containing protein | SAMN04488036_106146 | Not Available | Negative | 863216 - 864046 | 30497.2 |
| protein of unknown function | SAMN04488036_106147 | Not Available | Negative | 864204 - 866126 | 70753.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
