Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide/nickel transport system permease protein | SAMN04488036_106117 | Not Available | Positive | 833560 - 834516 | 34793.9 |
| peptide/nickel transport system permease protein | SAMN04488036_106118 | Not Available | Positive | 834527 - 835342 | 29195.4 |
| peptide/nickel transport system atp-binding protein | SAMN04488036_106119 | Not Available | Positive | 835339 - 836976 | 59250.6 |
| gluconate 5-dehydrogenase | SAMN04488036_106120 | Not Available | Negative | 837031 - 837798 | 26437.3 |
| uncharacterized protein, upf0262 family | SAMN04488036_106121 | Not Available | Positive | 837938 - 838417 | 18118.4 |
| protein-tyrosine-phosphatase | SAMN04488036_106122 | Not Available | Positive | 838515 - 838880 | 13629.9 |
| bacterial translation initiation factor 1 (bif-1) | SAMN04488036_106123 | Not Available | Positive | 839044 - 839262 | 8312.23 |
| septum formation protein | SAMN04488036_106124 | Not Available | Positive | 839294 - 839869 | 20600.9 |
| ribonuclease, rne/rng family | SAMN04488036_106125 | Not Available | Positive | 839892 - 840914 | 36438.5 |
| hypothetical protein | SAMN04488036_106126 | Not Available | Positive | 840911 - 841093 | 6752.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
