Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_106107 | Not Available | Negative | 821618 - 822388 | 29881.2 |
| hypothetical protein | SAMN04488036_106108 | Not Available | Positive | 822574 - 823455 | 32162.7 |
| acetyl-coa carboxylase carboxyl transferase subunit beta | SAMN04488036_106109 | Not Available | Positive | 823516 - 824469 | 34874.3 |
| dihydrofolate synthase / folylpolyglutamate synthase | SAMN04488036_106110 | Not Available | Positive | 824607 - 825881 | 44941.1 |
| glycine/d-amino acid oxidase | SAMN04488036_106111 | Not Available | Positive | 826189 - 827286 | 38520.5 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | SAMN04488036_106112 | Not Available | Positive | 827264 - 827578 | 11190.8 |
| nadph-dependent 2,4-dienoyl-coa reductase, sulfur reductase | SAMN04488036_106113 | Not Available | Positive | 827565 - 828971 | 49663.4 |
| uncharacterized membrane protein yeih | SAMN04488036_106114 | Not Available | Positive | 828961 - 829599 | 22507.6 |
| hypothetical protein | SAMN04488036_106115 | Not Available | Positive | 829699 - 831684 | 73135.6 |
| peptide/nickel transport system substrate-binding protein | SAMN04488036_106116 | Not Available | Positive | 831975 - 833558 | 57001.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
