Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine aminopeptidase, type i | SAMN04488036_10697 | Not Available | Negative | 811147 - 811953 | 29037.5 |
| sugar fermentation stimulation protein a | SAMN04488036_10698 | Not Available | Negative | 812194 - 812904 | 25998.3 |
| molybdenum cofactor synthesis domain-containing protein | SAMN04488036_10699 | Not Available | Positive | 812965 - 813684 | 24773.4 |
| acetyltransferase (gnat) family protein | SAMN04488036_106100 | Not Available | Positive | 813681 - 814409 | 25985.1 |
| uncharacterized peroxidase-related enzyme | SAMN04488036_106101 | Not Available | Positive | 814422 - 814994 | 21298.8 |
| ompa-ompf porin, oop family | SAMN04488036_106102 | Not Available | Positive | 814994 - 815932 | 32711.9 |
| transcriptional regulator, lysr family | SAMN04488036_106103 | Not Available | Negative | 816038 - 816943 | 33048.4 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN04488036_106104 | Not Available | Negative | 817204 - 818610 | 50574.4 |
| 2,4-dienoyl-coa reductase (nadph2) | SAMN04488036_106105 | Not Available | Negative | 818922 - 820949 | 72592.2 |
| hypothetical protein | SAMN04488036_106106 | Not Available | Negative | 821217 - 821594 | 13799.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
