Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipid-binding lipoprotein mlaa | SAMN04488036_10687 | Not Available | Negative | 801734 - 802513 | 28286.9 |
| atp-binding cassette, subfamily c | SAMN04488036_10688 | Not Available | Positive | 802690 - 804423 | 62186.7 |
| hlyd family secretion protein | SAMN04488036_10689 | Not Available | Positive | 804420 - 805724 | 48106.5 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN04488036_10690 | Not Available | Positive | 805839 - 806300 | 15725.0 |
| glycerophosphoryl diester phosphodiesterase | SAMN04488036_10691 | Not Available | Positive | 806311 - 807081 | 27739.8 |
| hypothetical protein | SAMN04488036_10692 | Not Available | Positive | 807146 - 808333 | 43577.0 |
| 4a-hydroxytetrahydrobiopterin dehydratase | SAMN04488036_10693 | Not Available | Positive | 808330 - 808632 | 11050.0 |
| peroxiredoxin | SAMN04488036_10694 | Not Available | Negative | 808663 - 809151 | 16950.4 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit | SAMN04488036_10695 | Not Available | Positive | 809238 - 810446 | 42544.8 |
| 16s rrna (guanine966-n2)-methyltransferase | SAMN04488036_10696 | Not Available | Positive | 810456 - 811019 | 20015.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
