Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| snoal-like domain-containing protein | SAMN04488036_10677 | Not Available | Negative | 791340 - 791750 | 15386.4 |
| ribosomal large subunit pseudouridine synthase a | SAMN04488036_10678 | Not Available | Positive | 791860 - 792513 | 24521.6 |
| dna polymerase iii, alpha subunit | SAMN04488036_10679 | Not Available | Positive | 792655 - 795507 | 105913.0 |
| hypothetical protein | SAMN04488036_10680 | Not Available | Negative | 795658 - 796134 | 16995.5 |
| hemin uptake protein hemp | SAMN04488036_10681 | Not Available | Negative | 796131 - 796289 | 5690.94 |
| hypothetical protein | SAMN04488036_10682 | Not Available | Positive | 796502 - 796816 | 11508.2 |
| ammonium transporter | SAMN04488036_10683 | Not Available | Negative | 796967 - 798283 | 45970.7 |
| nitrogen regulatory protein p-ii family | SAMN04488036_10684 | Not Available | Negative | 798309 - 798647 | 12195.9 |
| membrane carboxypeptidase (penicillin-binding protein) | SAMN04488036_10685 | Not Available | Positive | 798906 - 801062 | 77910.8 |
| phospholipid transport system substrate-binding protein | SAMN04488036_10686 | Not Available | Negative | 801145 - 801759 | 22092.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
