Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gaf domain-containing protein | SAMN04488036_10667 | Not Available | Positive | 780934 - 781395 | 16301.3 |
| transcriptional regulator, xre family with cupin sensor | SAMN04488036_10668 | Not Available | Positive | 781559 - 782131 | 20910.8 |
| uncharacterized conserved protein | SAMN04488036_10669 | Not Available | Positive | 782142 - 782510 | 13132.6 |
| hypothetical protein | SAMN04488036_10670 | Not Available | Positive | 782513 - 782701 | 6635.27 |
| dimethylglycine dehydrogenase | SAMN04488036_10671 | Not Available | Positive | 782713 - 785163 | 90782.4 |
| homocysteine/selenocysteine methylase (s-methylmethionine-dependent) | SAMN04488036_10672 | Not Available | Positive | 785160 - 786062 | 31260.4 |
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | SAMN04488036_10673 | Not Available | Positive | 786158 - 788608 | 89654.7 |
| homocysteine s-methyltransferase | SAMN04488036_10674 | Not Available | Positive | 788701 - 789624 | 32488.6 |
| chloramphenicol-sensitive protein rard | SAMN04488036_10675 | Not Available | Positive | 789729 - 790631 | 32884.1 |
| lysophospholipase l1 | SAMN04488036_10676 | Not Available | Negative | 790628 - 791335 | 25358.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
