Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane lipoprotein-sorting protein | SAMN04488036_10657 | Not Available | Positive | 772994 - 773587 | 21397.4 |
| hypothetical protein | SAMN04488036_10658 | Not Available | Negative | 773606 - 774193 | 22396.8 |
| hypothetical protein | SAMN04488036_10659 | Not Available | Negative | 774275 - 775156 | 30857.1 |
| heat shock protein hspq | SAMN04488036_10660 | Not Available | Positive | 775241 - 775567 | 12788.8 |
| rhodanese-related sulfurtransferase | SAMN04488036_10661 | Not Available | Negative | 775598 - 775984 | 14030.8 |
| gamma-glutamyltransferase 2. threonine peptidase. merops family t03 | SAMN04488036_10662 | Not Available | Negative | 775986 - 777563 | 55575.1 |
| serine/threonine-protein kinase rsbw | SAMN04488036_10663 | Not Available | Negative | 777669 - 778112 | 16251.4 |
| anti-sigma b factor antagonist | SAMN04488036_10664 | Not Available | Negative | 778146 - 778475 | 11886.3 |
| acetyl-coa c-acetyltransferase | SAMN04488036_10665 | Not Available | Positive | 778657 - 779829 | 40413.7 |
| acetyl esterase | SAMN04488036_10666 | Not Available | Positive | 779890 - 780933 | 37758.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
