Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtp cyclohydrolase ii | SAMN04488036_10647 | Not Available | Negative | 760880 - 761971 | 39006.2 |
| two component transcriptional regulator, winged helix family | SAMN04488036_10648 | Not Available | Positive | 762144 - 762830 | 25813.1 |
| exodeoxyribonuclease-3 | SAMN04488036_10649 | Not Available | Positive | 763237 - 764025 | 29648.9 |
| thioredoxin | SAMN04488036_10650 | Not Available | Positive | 764079 - 765005 | 31750.3 |
| hypothetical protein | SAMN04488036_10651 | Not Available | Positive | 765033 - 765677 | 24125.0 |
| hypothetical protein | SAMN04488036_10652 | Not Available | Positive | 765674 - 765865 | 7079.6 |
| 2-octaprenyl-6-methoxyphenol hydroxylase | SAMN04488036_10653 | Not Available | Negative | 765943 - 767157 | 43345.1 |
| aspartyl-trna(asn)/glutamyl-trna(gln) amidotransferase subunit a | SAMN04488036_10654 | Not Available | Positive | 767242 - 768570 | 46609.8 |
| aspartate/methionine/tyrosine aminotransferase | SAMN04488036_10655 | Not Available | Positive | 768754 - 769932 | 42976.2 |
| dna translocase ftsk | SAMN04488036_10656 | Not Available | Positive | 769952 - 772897 | 105638.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
