Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps-assembly lipoprotein | SAMN04488036_10637 | Not Available | Negative | 750333 - 750830 | 17754.0 |
| leucyl-trna synthetase | SAMN04488036_10638 | Not Available | Negative | 750820 - 753576 | 102401.0 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488036_10639 | Not Available | Positive | 753659 - 754834 | 44372.3 |
| protein of unknown function | SAMN04488036_10640 | Not Available | Negative | 754895 - 755413 | 18376.5 |
| outer membrane protein ompu | SAMN04488036_10641 | Not Available | Positive | 755707 - 756594 | 29776.3 |
| outer membrane protein ompu | SAMN04488036_10642 | Not Available | Positive | 756967 - 757845 | 28860.3 |
| outer membrane protein ompu | SAMN04488036_10643 | Not Available | Positive | 758252 - 759160 | 30825.3 |
| hypothetical protein | SAMN04488036_10644 | Not Available | Positive | 759272 - 759928 | 23283.0 |
| hypothetical protein | SAMN04488036_10645 | Not Available | Positive | 759993 - 760385 | 14171.7 |
| l,d-peptidoglycan transpeptidase ykud, erfk/ybis/ycfs/ynhg family | SAMN04488036_10646 | Not Available | Negative | 760389 - 760883 | 18461.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
