Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_10627 | Not Available | Positive | 738886 - 739329 | 16663.3 |
| rhamnan synthesis protein f | SAMN04488036_10628 | Not Available | Positive | 739335 - 742739 | 125769.0 |
| hypothetical protein | SAMN04488036_10629 | Not Available | Positive | 742748 - 743740 | 37079.9 |
| hypothetical protein | SAMN04488036_10630 | Not Available | Positive | 743772 - 744041 | 9526.35 |
| beta-methylmalyl-coa/l-malyl-coa lyase | SAMN04488036_10631 | Not Available | Negative | 744277 - 745236 | 34102.6 |
| uncharacterized conserved protein, nad-dependent epimerase/dehydratase family | SAMN04488036_10632 | Not Available | Positive | 745533 - 746534 | 35752.1 |
| l-alanine-dl-glutamate epimerase | SAMN04488036_10633 | Not Available | Positive | 746723 - 747685 | 33920.8 |
| d-alanine transaminase | SAMN04488036_10634 | Not Available | Positive | 747696 - 748556 | 31453.6 |
| glutathione s-transferase | SAMN04488036_10635 | Not Available | Negative | 748606 - 749199 | 22186.8 |
| dna polymerase iii, delta subunit | SAMN04488036_10636 | Not Available | Negative | 749311 - 750336 | 37283.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
