Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_105300 | Not Available | Positive | 709509 - 709829 | 11467.4 |
| hypothetical protein | SAMN04488036_105301 | Not Available | Negative | 709902 - 710987 | 39315.8 |
| outer membrane protein | SAMN04488036_105302 | Not Available | Negative | 711062 - 712471 | 50449.8 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN04488036_105303 | Not Available | Negative | 712518 - 713171 | 23343.8 |
| integrase core domain-containing protein | SAMN04488036_105305 | Not Available | Negative | 713599 - 713873 | 10432.2 |
| vcbs repeat-containing protein | SAMN04488036_1061 | Not Available | Negative | 713874 - 715096 | 41160.4 |
| hlyd family secretion protein | SAMN04488036_1062 | Not Available | Negative | 715108 - 716409 | 47576.2 |
| abc-type bacteriocin/lantibiotic exporter, contains an n-terminal double-glycine peptidase domain | SAMN04488036_1063 | Not Available | Negative | 716402 - 718342 | 67998.7 |
| abc-type bacteriocin/lantibiotic exporter, contains an n-terminal double-glycine peptidase domain | SAMN04488036_1064 | Not Available | Negative | 718339 - 719868 | 53437.5 |
| transcriptional regulator, asnc family | SAMN04488036_1065 | Not Available | Negative | 720413 - 720874 | 16864.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
