Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pilus assembly protein cpae | SAMN04488036_105269 | Not Available | Positive | 678757 - 680004 | 45826.6 |
| pilus assembly protein cpaf | SAMN04488036_105270 | Not Available | Positive | 680020 - 681498 | 54276.2 |
| tight adherence protein b | SAMN04488036_105271 | Not Available | Positive | 681505 - 682473 | 35464.0 |
| tight adherence protein c | SAMN04488036_105272 | Not Available | Positive | 682487 - 683461 | 35478.8 |
| tpr repeat-containing protein | SAMN04488036_105273 | Not Available | Positive | 683480 - 684040 | 19786.6 |
| tetratricopeptide repeat-containing protein | SAMN04488036_105274 | Not Available | Positive | 684071 - 684919 | 31362.8 |
| prepilin peptidase cpaa | SAMN04488036_105275 | Not Available | Positive | 684934 - 685467 | 19597.5 |
| hypothetical protein | SAMN04488036_105276 | Not Available | Positive | 685584 - 686891 | 48685.0 |
| zinc/manganese transport system atp-binding protein | SAMN04488036_105278 | Not Available | Positive | 687660 - 688418 | 27463.3 |
| zinc/manganese transport system permease protein | SAMN04488036_105279 | Not Available | Positive | 688411 - 689313 | 31630.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
