Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin, 2fe-2s | SAMN04488036_105249 | Not Available | Negative | 662627 - 662950 | 11647.8 |
| dna-directed rna polymerase | SAMN04488036_105250 | Not Available | Positive | 663054 - 663434 | 13906.2 |
| putative peptidoglycan binding domain-containing protein | SAMN04488036_105251 | Not Available | Positive | 663506 - 664048 | 19886.8 |
| serine protease do | SAMN04488036_105252 | Not Available | Negative | 664105 - 665574 | 51992.2 |
| hypothetical protein | SAMN04488036_105253 | Not Available | Negative | 665736 - 665930 | 6796.78 |
| protease ftsh subunit hflc | SAMN04488036_105254 | Not Available | Negative | 665930 - 666802 | 32535.7 |
| protease ftsh subunit hflk | SAMN04488036_105255 | Not Available | Negative | 666804 - 667940 | 40598.5 |
| nadph-glutathione reductase | SAMN04488036_105256 | Not Available | Negative | 668024 - 669379 | 48768.6 |
| ribose-5-phosphate isomerase | SAMN04488036_105257 | Not Available | Negative | 669395 - 670183 | 28136.7 |
| glutathione s-transferase | SAMN04488036_105258 | Not Available | Positive | 670383 - 671081 | 25392.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
