Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| manganese-dependent inorganic pyrophosphatase | SAMN04488036_105217 | Not Available | Positive | 630230 - 631144 | 32803.0 |
| 2-methylisocitrate lyase, pep mutase family | SAMN04488036_105218 | Not Available | Negative | 631227 - 632081 | 29037.6 |
| cytochrome c oxidase subunit 1 | SAMN04488036_105219 | Not Available | Positive | 632310 - 633989 | 62515.6 |
| methyltransferase domain-containing protein | SAMN04488036_105220 | Not Available | Positive | 634071 - 634685 | 21679.6 |
| uncharacterized membrane protein | SAMN04488036_105221 | Not Available | Positive | 634777 - 635259 | 18320.2 |
| conserved hypothetical protein | SAMN04488036_105222 | Not Available | Positive | 635358 - 635666 | 10513.6 |
| atp-binding protein involved in chromosome partitioning | SAMN04488036_105223 | Not Available | Negative | 635729 - 636832 | 38162.8 |
| uncharacterized conserved protein yjis, duf1127 family | SAMN04488036_105224 | Not Available | Positive | 637062 - 637280 | 8233.9 |
| lysr family transcriptional regulator, glycine cleavage system transcriptional activator | SAMN04488036_105225 | Not Available | Negative | 637887 - 638756 | 31298.5 |
| glycine hydroxymethyltransferase | SAMN04488036_105226 | Not Available | Positive | 638853 - 640160 | 46051.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
