Shimia haliotis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia haliotis is a Gram-negative, aerobic bacterium characterized by its rod shape. It thrives in mesophilic conditions, with an optimal growth temperature of 29°C. This species is notable for having a single replicon, which is a defining feature of its genomic structure. As a mesophilic organism, Shimia haliotis is well-suited to environments that maintain moderate temperatures, making it relevant to various ecological niches where such conditions prevail. The aerobic nature of this bacterium suggests its involvement in processes that require oxygen, possibly influencing nutrient cycling and organic matter decomposition in its habitat. The accession number FOSZ00000000.1 is associated with its genomic data, providing a resource for further research into its biology and potential applications. Understanding the traits of Shimia haliotis may offer insights into its ecological roles and interactions within its environment, particularly in aerobic processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia haliotis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia haliotis strain DSM 28453 genome assembly, contig:

Gene Summary

Adenine Count

840910 bp

Thymine Count

835965 bp

Guanine Count

1149776 bp

Cytosine Count

1169318 bp

Genome Length

3995969 bp

Protein-coding Genes

1771 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
manganese-dependent inorganic pyrophosphataseSAMN04488036_105217Not AvailablePositive630230 - 63114432803.0
2-methylisocitrate lyase, pep mutase familySAMN04488036_105218Not AvailableNegative631227 - 63208129037.6
cytochrome c oxidase subunit 1SAMN04488036_105219Not AvailablePositive632310 - 63398962515.6
methyltransferase domain-containing proteinSAMN04488036_105220Not AvailablePositive634071 - 63468521679.6
uncharacterized membrane proteinSAMN04488036_105221Not AvailablePositive634777 - 63525918320.2
conserved hypothetical proteinSAMN04488036_105222Not AvailablePositive635358 - 63566610513.6
atp-binding protein involved in chromosome partitioningSAMN04488036_105223Not AvailableNegative635729 - 63683238162.8
uncharacterized conserved protein yjis, duf1127 familySAMN04488036_105224Not AvailablePositive637062 - 6372808233.9
lysr family transcriptional regulator, glycine cleavage system transcriptional activatorSAMN04488036_105225Not AvailableNegative637887 - 63875631298.5
glycine hydroxymethyltransferaseSAMN04488036_105226Not AvailablePositive638853 - 64016046051.1

Displaying genes 591 – 600 of 1771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.