Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, asnc family | SAMN04488036_105207 | Not Available | Negative | 619150 - 619650 | 18545.3 |
| thioredoxin reductase (nadph) | SAMN04488036_105208 | Not Available | Positive | 619869 - 620810 | 33504.1 |
| cytochrome p450 | SAMN04488036_105209 | Not Available | Positive | 620907 - 622259 | 49895.3 |
| adenylate/guanylate cyclase | SAMN04488036_105210 | Not Available | Positive | 622312 - 624009 | 62069.0 |
| adenylylsulfate kinase /sulfate adenylyltransferase | SAMN04488036_105211 | Not Available | Positive | 624127 - 626202 | 77096.8 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN04488036_105212 | Not Available | Negative | 626267 - 626767 | 16899.5 |
| hypothetical protein | SAMN04488036_105213 | Not Available | Positive | 626939 - 627292 | 12981.3 |
| beta-lactamase class a | SAMN04488036_105214 | Not Available | Negative | 627325 - 628209 | 31249.2 |
| hypothetical protein | SAMN04488036_105215 | Not Available | Negative | 628345 - 629007 | 23813.8 |
| hypothetical protein | SAMN04488036_105216 | Not Available | Positive | 629105 - 630112 | 36844.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
