Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrroline-5-carboxylate reductase | SAMN04488036_105197 | Not Available | Negative | 609612 - 610427 | 27370.2 |
| hypothetical protein | SAMN04488036_105198 | Not Available | Negative | 610460 - 610960 | 19046.4 |
| hlyd family secretion protein | SAMN04488036_105199 | Not Available | Negative | 611261 - 612496 | 44024.7 |
| putative abc transport system permease protein | SAMN04488036_105200 | Not Available | Negative | 612502 - 614865 | 84667.6 |
| putative abc transport system atp-binding protein | SAMN04488036_105201 | Not Available | Negative | 614870 - 615598 | 26415.4 |
| hypothetical protein | SAMN04488036_105202 | Not Available | Negative | 615694 - 615933 | 9086.8 |
| prolipoprotein diacylglyceryl transferase | SAMN04488036_105203 | Not Available | Positive | 616055 - 616936 | 32268.2 |
| sam-dependent methyltransferase, mida family | SAMN04488036_105204 | Not Available | Positive | 616933 - 617988 | 37726.1 |
| conserved hypothetical protein | SAMN04488036_105205 | Not Available | Positive | 617985 - 618743 | 26968.4 |
| hypothetical protein | SAMN04488036_105206 | Not Available | Positive | 618922 - 619059 | 4870.09 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
