Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidinol-phosphate aminotransferase | SAMN04488036_105187 | Not Available | Positive | 599906 - 600925 | 36016.1 |
| hypothetical protein | SAMN04488036_105188 | Not Available | Positive | 601032 - 601202 | 6414.04 |
| alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase | SAMN04488036_105189 | Not Available | Negative | 601199 - 602395 | 42486.1 |
| atp-binding cassette, subfamily b | SAMN04488036_105190 | Not Available | Positive | 602536 - 604407 | 67354.1 |
| beta-ketodecanoyl-[acyl-carrier-protein] synthase | SAMN04488036_105191 | Not Available | Positive | 604483 - 605598 | 40509.9 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN04488036_105192 | Not Available | Negative | 605982 - 606839 | 32250.6 |
| hypothetical protein | SAMN04488036_105193 | Not Available | Negative | 606872 - 607330 | 16731.8 |
| thymidine kinase | SAMN04488036_105194 | Not Available | Positive | 607681 - 608271 | 22077.2 |
| hydroxypyruvate reductase | SAMN04488036_105195 | Not Available | Negative | 608331 - 609242 | 32662.3 |
| pp_00570 | SAMN04488036_105196 | Not Available | Negative | 609281 - 609619 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
