Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized alpha/beta hydrolase domain | SAMN04488036_105177 | Not Available | Negative | 587386 - 588384 | 37591.3 |
| carbon-monoxide dehydrogenase large subunit | SAMN04488036_105178 | Not Available | Negative | 588434 - 590734 | 82713.1 |
| ornithine decarboxylase | SAMN04488036_105179 | Not Available | Negative | 590808 - 591935 | 40198.9 |
| transcriptional regulator, asnc family | SAMN04488036_105180 | Not Available | Positive | 592038 - 592478 | 15767.1 |
| dna-binding transcriptional regulator, lysr family | SAMN04488036_105181 | Not Available | Negative | 592480 - 593370 | 32148.7 |
| chlorinating enzyme | SAMN04488036_105182 | Not Available | Positive | 593476 - 594333 | 31171.0 |
| predicted hd phosphohydrolase | SAMN04488036_105183 | Not Available | Positive | 594330 - 594974 | 24939.0 |
| valyl-trna synthetase | SAMN04488036_105184 | Not Available | Positive | 595328 - 598462 | 116207.0 |
| protein of unknown function | SAMN04488036_105185 | Not Available | Positive | 598503 - 598829 | 11904.5 |
| enoyl-coa hydratase/carnithine racemase | SAMN04488036_105186 | Not Available | Negative | 598908 - 599699 | 28393.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
