Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ectoine hydrolase | SAMN04488036_105167 | Not Available | Positive | 577611 - 578780 | 42418.8 |
| trna(arg) a34 adenosine deaminase tada | SAMN04488036_105168 | Not Available | Negative | 578777 - 579226 | 15661.6 |
| 23s rrna pseudouridine2605 synthase | SAMN04488036_105169 | Not Available | Positive | 579291 - 580160 | 32025.9 |
| membrane protein terc, possibly involved in tellurium resistance | SAMN04488036_105170 | Not Available | Positive | 580305 - 581132 | 29890.4 |
| 5-bromo-4-chloroindolyl phosphate hydrolysis protein | SAMN04488036_105171 | Not Available | Positive | 581298 - 582173 | 32154.6 |
| uncharacterized conserved protein yaan involved in tellurite resistance | SAMN04488036_105172 | Not Available | Positive | 582203 - 583402 | 43847.7 |
| protein of unknown function | SAMN04488036_105173 | Not Available | Positive | 583399 - 584322 | 33654.7 |
| membrane protease subunit, stomatin/prohibitin family, contains c-terminal zn-ribbon domain | SAMN04488036_105174 | Not Available | Positive | 584347 - 585492 | 41152.1 |
| hypothetical protein | SAMN04488036_105175 | Not Available | Positive | 585583 - 586689 | 41133.9 |
| nitroreductase | SAMN04488036_105176 | Not Available | Positive | 586709 - 587380 | 24417.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
