Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_105157 | Not Available | Negative | 569700 - 570209 | 18311.4 |
| 16s rrna (uracil1498-n3)-methyltransferase | SAMN04488036_105158 | Not Available | Negative | 570267 - 571097 | 30077.0 |
| 4-hydroxybenzoate polyprenyltransferase | SAMN04488036_105159 | Not Available | Positive | 571098 - 572078 | 35731.0 |
| ompa-ompf porin, oop family | SAMN04488036_105160 | Not Available | Positive | 572136 - 574274 | 75057.9 |
| hypothetical protein | SAMN04488036_105161 | Not Available | Positive | 574261 - 574587 | 12541.8 |
| molybdopterin synthase subunit moae | SAMN04488036_105162 | Not Available | Negative | 574772 - 575215 | 16314.5 |
| molybdopterin synthase subunit moad | SAMN04488036_105163 | Not Available | Negative | 575219 - 575464 | 9040.6 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | SAMN04488036_105164 | Not Available | Negative | 575469 - 576128 | 24507.7 |
| ceramidase | SAMN04488036_105165 | Not Available | Negative | 576205 - 576855 | 24178.2 |
| l-ascorbate metabolism protein ulag, beta-lactamase superfamily | SAMN04488036_105166 | Not Available | Positive | 576916 - 577611 | 24891.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
