Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein-tyrosine phosphatase | SAMN04488036_105137 | Not Available | Negative | 551712 - 552149 | 15658.5 |
| nad-dependent deacetylase | SAMN04488036_105138 | Not Available | Positive | 552279 - 552980 | 24572.8 |
| hypothetical protein | SAMN04488036_105139 | Not Available | Negative | 553031 - 553498 | 16677.1 |
| hypothetical protein | SAMN04488036_105140 | Not Available | Negative | 553546 - 553920 | 13142.2 |
| lsu ribosomal protein l28p | SAMN04488036_105141 | Not Available | Negative | 553996 - 554286 | 10456.6 |
| putative transcriptional regulator | SAMN04488036_105142 | Not Available | Negative | 554516 - 555100 | 20627.4 |
| thiol-disulfide interchange protein, contains dsbc and dsbd domains | SAMN04488036_105143 | Not Available | Positive | 555177 - 556052 | 31505.0 |
| multidrug efflux pump subunit acrb | SAMN04488036_105144 | Not Available | Negative | 556044 - 559439 | 121865.0 |
| rnd family efflux transporter, mfp subunit | SAMN04488036_105145 | Not Available | Negative | 559443 - 560897 | 52337.6 |
| molybdenum cofactor biosynthesis protein b | SAMN04488036_105146 | Not Available | Negative | 561037 - 561579 | 20112.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
