Shimia haliotis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia haliotis is a Gram-negative, aerobic bacterium characterized by its rod shape. It thrives in mesophilic conditions, with an optimal growth temperature of 29°C. This species is notable for having a single replicon, which is a defining feature of its genomic structure. As a mesophilic organism, Shimia haliotis is well-suited to environments that maintain moderate temperatures, making it relevant to various ecological niches where such conditions prevail. The aerobic nature of this bacterium suggests its involvement in processes that require oxygen, possibly influencing nutrient cycling and organic matter decomposition in its habitat. The accession number FOSZ00000000.1 is associated with its genomic data, providing a resource for further research into its biology and potential applications. Understanding the traits of Shimia haliotis may offer insights into its ecological roles and interactions within its environment, particularly in aerobic processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia haliotis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia haliotis strain DSM 28453 genome assembly, contig:

Gene Summary

Adenine Count

840910 bp

Thymine Count

835965 bp

Guanine Count

1149776 bp

Cytosine Count

1169318 bp

Genome Length

3995969 bp

Protein-coding Genes

1771 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-alanine-dl-glutamate epimeraseSAMN04488036_105117Not AvailableNegative534921 - 53602439587.2
d-amino-acid dehydrogenaseSAMN04488036_105118Not AvailableNegative536038 - 53729745000.9
proline racemaseSAMN04488036_105119Not AvailableNegative537294 - 53822632086.2
4-hydroxy-tetrahydrodipicolinate synthaseSAMN04488036_105120Not AvailableNegative538217 - 53917634503.3
amino acid abc transporter atp-binding protein, paat familySAMN04488036_105121Not AvailableNegative539214 - 53993626303.8
amino acid abc transporter membrane protein 2, paat familySAMN04488036_105122Not AvailableNegative539933 - 54059523915.7
amino acid abc transporter membrane protein 1, paat familySAMN04488036_105123Not AvailableNegative540606 - 54126824970.3
polar amino acid transport system substrate-binding proteinSAMN04488036_105124Not AvailableNegative541329 - 54212928910.1
nadh dehydrogenaseSAMN04488036_105125Not AvailableNegative542472 - 54278311511.5
excinuclease abc subunit bSAMN04488036_105126Not AvailablePositive543299 - 54548881839.9

Displaying genes 491 – 500 of 1771 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.