Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-alanine-dl-glutamate epimerase | SAMN04488036_105117 | Not Available | Negative | 534921 - 536024 | 39587.2 |
| d-amino-acid dehydrogenase | SAMN04488036_105118 | Not Available | Negative | 536038 - 537297 | 45000.9 |
| proline racemase | SAMN04488036_105119 | Not Available | Negative | 537294 - 538226 | 32086.2 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN04488036_105120 | Not Available | Negative | 538217 - 539176 | 34503.3 |
| amino acid abc transporter atp-binding protein, paat family | SAMN04488036_105121 | Not Available | Negative | 539214 - 539936 | 26303.8 |
| amino acid abc transporter membrane protein 2, paat family | SAMN04488036_105122 | Not Available | Negative | 539933 - 540595 | 23915.7 |
| amino acid abc transporter membrane protein 1, paat family | SAMN04488036_105123 | Not Available | Negative | 540606 - 541268 | 24970.3 |
| polar amino acid transport system substrate-binding protein | SAMN04488036_105124 | Not Available | Negative | 541329 - 542129 | 28910.1 |
| nadh dehydrogenase | SAMN04488036_105125 | Not Available | Negative | 542472 - 542783 | 11511.5 |
| excinuclease abc subunit b | SAMN04488036_105126 | Not Available | Positive | 543299 - 545488 | 81839.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
