Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator, anaerobic regulatory protein | SAMN04488036_105107 | Not Available | Positive | 525192 - 525881 | 24938.9 |
| protein of unknown function | SAMN04488036_105108 | Not Available | Positive | 525966 - 526598 | 22750.9 |
| putative abc transport system atp-binding protein | SAMN04488036_105109 | Not Available | Positive | 526619 - 527314 | 24495.7 |
| putative abc transport system permease protein | SAMN04488036_105110 | Not Available | Positive | 527311 - 528561 | 45125.5 |
| hypothetical protein | SAMN04488036_105111 | Not Available | Positive | 528585 - 529079 | 17448.8 |
| lysr family transcriptional regulator, glycine cleavage system transcriptional activator | SAMN04488036_105112 | Not Available | Negative | 529239 - 530078 | 30394.9 |
| glutaryl-coa dehydrogenase | SAMN04488036_105113 | Not Available | Positive | 530222 - 531439 | 44323.2 |
| nadp-dependent aldehyde dehydrogenase | SAMN04488036_105114 | Not Available | Negative | 531505 - 533013 | 52287.0 |
| transcriptional regulator, gntr family | SAMN04488036_105115 | Not Available | Negative | 533092 - 533772 | 25564.6 |
| proline racemase | SAMN04488036_105116 | Not Available | Negative | 533880 - 534911 | 36612.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
