Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| creatinase | SAMN04488036_10597 | Not Available | Negative | 512837 - 514054 | 44605.7 |
| putative spermidine/putrescine transport system permease protein | SAMN04488036_10598 | Not Available | Negative | 514215 - 515426 | 43788.8 |
| putative spermidine/putrescine transport system permease protein | SAMN04488036_10599 | Not Available | Negative | 515431 - 516702 | 47014.6 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN04488036_105100 | Not Available | Negative | 516795 - 517883 | 39675.7 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN04488036_105101 | Not Available | Negative | 517959 - 519059 | 40506.6 |
| maleate isomerase | SAMN04488036_105102 | Not Available | Negative | 519193 - 519900 | 24866.9 |
| xaa-pro aminopeptidase | SAMN04488036_105103 | Not Available | Negative | 519897 - 521048 | 40913.9 |
| diaminopropionate ammonia-lyase | SAMN04488036_105104 | Not Available | Negative | 521045 - 522091 | 35588.4 |
| fatty-acyl-coa synthase | SAMN04488036_105105 | Not Available | Negative | 522239 - 524158 | 68799.9 |
| transcriptional regulator, tetr family | SAMN04488036_105106 | Not Available | Negative | 524336 - 524935 | 21804.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
