Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_10587 | Not Available | Negative | 501247 - 501885 | 22854.3 |
| hypothetical protein | SAMN04488036_10588 | Not Available | Positive | 502161 - 502418 | 9385.09 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN04488036_10589 | Not Available | Positive | 502651 - 503982 | 47860.6 |
| amino acid/amide abc transporter membrane protein 1, haat family | SAMN04488036_10590 | Not Available | Positive | 504056 - 505999 | 69015.3 |
| amino acid/amide abc transporter membrane protein 2, haat family | SAMN04488036_10591 | Not Available | Positive | 506000 - 507256 | 44564.0 |
| urea transport system atp-binding protein | SAMN04488036_10592 | Not Available | Positive | 507253 - 507993 | 27037.6 |
| amino acid/amide abc transporter atp-binding protein 2, haat family (tc 3.a.1.4.-) | SAMN04488036_10593 | Not Available | Positive | 507983 - 508690 | 25506.8 |
| putative efflux protein, mate family | SAMN04488036_10594 | Not Available | Negative | 508687 - 510102 | 49739.8 |
| kef-type potassium/proton antiporter, cpa2 family | SAMN04488036_10595 | Not Available | Negative | 510099 - 512069 | 70679.8 |
| kef-type potassium/proton antiporter accessory protein, cpa2 family | SAMN04488036_10596 | Not Available | Negative | 512073 - 512684 | 23114.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
