Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsular polysaccharide transport system permease protein | SAMN04488036_10576 | Not Available | Positive | 479376 - 481076 | 62100.1 |
| 2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase) | SAMN04488036_10577 | Not Available | Positive | 481076 - 481909 | 29286.3 |
| phosphomannomutase / phosphoglucomutase | SAMN04488036_10578 | Not Available | Positive | 481942 - 483438 | 54449.0 |
| 3-hydroxyisobutyrate dehydrogenase | SAMN04488036_10579 | Not Available | Negative | 483514 - 484464 | 33115.9 |
| isocitrate dehydrogenase | SAMN04488036_10580 | Not Available | Negative | 484722 - 486938 | 77899.8 |
| homodimeric glycerol 3-phosphate dehydrogenase (quinone) | SAMN04488036_10581 | Not Available | Negative | 487095 - 488696 | 59034.4 |
| conserved repeat domain-containing protein | SAMN04488036_10582 | Not Available | Positive | 489023 - 495979 | 230833.0 |
| transcriptional regulator, deor family | SAMN04488036_10583 | Not Available | Positive | 496087 - 496851 | 27084.2 |
| ca2+-binding protein, rtx toxin-related | SAMN04488036_10584 | Not Available | Negative | 496852 - 499296 | 85015.0 |
| hydroxypyruvate reductase | SAMN04488036_10585 | Not Available | Negative | 499541 - 500779 | 42151.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
