Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mred | SAMN04488036_10566 | Not Available | Positive | 470451 - 471035 | 21131.5 |
| peptidoglycan glycosyltransferase | SAMN04488036_10567 | Not Available | Positive | 471035 - 472978 | 71253.2 |
| cell elongation-specific peptidoglycan biosynthesis regulator roda | SAMN04488036_10568 | Not Available | Positive | 472987 - 474126 | 41583.1 |
| hypothetical protein | SAMN04488036_10569 | Not Available | Positive | 474271 - 474681 | 15105.9 |
| glyoxylate/hydroxypyruvate reductase a | SAMN04488036_10570 | Not Available | Positive | 474678 - 475607 | 34237.9 |
| sseb protein n-terminal domain-containing protein | SAMN04488036_10571 | Not Available | Negative | 475659 - 476450 | 27729.0 |
| uracil-dna glycosylase | SAMN04488036_10572 | Not Available | Negative | 476447 - 477052 | 22560.2 |
| transcriptional regulator, arsr family | SAMN04488036_10573 | Not Available | Positive | 477115 - 477459 | 12024.4 |
| hypothetical protein | SAMN04488036_10574 | Not Available | Positive | 477452 - 478486 | 36241.9 |
| capsular polysaccharide transport system atp-binding protein | SAMN04488036_10575 | Not Available | Positive | 478739 - 479398 | 24771.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
