Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multisubunit potassium/proton antiporter, phag subunit (tc 2.a.63.1.1) | SAMN04488036_10556 | Not Available | Negative | 460604 - 460990 | 14211.3 |
| multisubunit potassium/proton antiporter, phaf subunit | SAMN04488036_10557 | Not Available | Negative | 461001 - 461270 | 9895.51 |
| multisubunit potassium/proton antiporter, phae subunit | SAMN04488036_10558 | Not Available | Negative | 461270 - 461758 | 18060.6 |
| multisubunit potassium/proton antiporter, phad subunit | SAMN04488036_10559 | Not Available | Negative | 461755 - 463281 | 53315.8 |
| multisubunit potassium/proton antiporter, phac subunit | SAMN04488036_10560 | Not Available | Negative | 463278 - 463646 | 12975.8 |
| multisubunit potassium/proton antiporter, phaa subunit /multisubunit potassium/proton antiporter, phab subunit | SAMN04488036_10561 | Not Available | Negative | 463648 - 466512 | 102167.0 |
| 23s rrna (adenine2030-n6)-methyltransferase | SAMN04488036_10562 | Not Available | Negative | 466704 - 467489 | 28818.9 |
| conserved hypothetical protein | SAMN04488036_10563 | Not Available | Positive | 467680 - 468330 | 23641.7 |
| rod shape-determining protein mreb | SAMN04488036_10564 | Not Available | Positive | 468495 - 469535 | 36581.5 |
| rod shape-determining protein mrec | SAMN04488036_10565 | Not Available | Positive | 469616 - 470509 | 32493.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
