Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar kinase of the nbd/hsp70 family, may contain an n-terminal hth domain | SAMN04488036_10546 | Not Available | Negative | 445898 - 447085 | 42275.0 |
| xylose-binding protein | SAMN04488036_10547 | Not Available | Positive | 447300 - 448328 | 35243.5 |
| d-xylose transport system permease protein | SAMN04488036_10548 | Not Available | Positive | 448395 - 449693 | 45318.6 |
| monosaccharide abc transporter atp-binding protein, cut2 family | SAMN04488036_10549 | Not Available | Positive | 449693 - 450451 | 27097.7 |
| glucokinase | SAMN04488036_10550 | Not Available | Positive | 450478 - 451401 | 32069.9 |
| 2,4-dienoyl-coa reductase | SAMN04488036_10551 | Not Available | Positive | 451494 - 452690 | 42345.2 |
| catalase-peroxidase | SAMN04488036_10552 | Not Available | Negative | 452769 - 454952 | 78429.4 |
| lysr family transcriptional regulator, hydrogen peroxide-inducible genes activator | SAMN04488036_10553 | Not Available | Positive | 455065 - 455967 | 32342.1 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN04488036_10554 | Not Available | Negative | 456178 - 459312 | 110512.0 |
| membrane fusion protein, multidrug efflux system | SAMN04488036_10555 | Not Available | Negative | 459316 - 460452 | 40787.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
