Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488036_10536 | Not Available | Positive | 434531 - 434731 | 7185.58 |
| pp_00412 | SAMN04488036_10537 | Not Available | Negative | 434728 - 435210 | Not Available |
| trap transporter, dctm subunit | SAMN04488036_10538 | Not Available | Negative | 435222 - 436544 | 46768.3 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN04488036_10539 | Not Available | Negative | 436541 - 437047 | 18385.2 |
| cu(i)-responsive transcriptional regulator | SAMN04488036_10540 | Not Available | Negative | 437113 - 437508 | 14383.2 |
| cu+-exporting atpase | SAMN04488036_10541 | Not Available | Negative | 437505 - 439958 | 84578.1 |
| xylulokinase | SAMN04488036_10542 | Not Available | Positive | 440201 - 441655 | 51060.4 |
| d-xylose isomerase | SAMN04488036_10543 | Not Available | Positive | 441652 - 442956 | 48494.0 |
| cytochrome c peroxidase | SAMN04488036_10544 | Not Available | Positive | 443038 - 444342 | 46309.3 |
| repeat domain-containing protein | SAMN04488036_10545 | Not Available | Negative | 444367 - 445908 | 54640.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
