Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitronate monooxygenase | SAMN04488036_10524 | Not Available | Negative | 420678 - 421667 | 35098.8 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488036_10525 | Not Available | Negative | 421864 - 422754 | 32825.2 |
| fatty-acyl-coa synthase | SAMN04488036_10526 | Not Available | Negative | 422754 - 424379 | 59244.9 |
| hypothetical protein | SAMN04488036_10527 | Not Available | Positive | 424613 - 425524 | 33552.7 |
| transcriptional regulator, tetr family | SAMN04488036_10528 | Not Available | Negative | 425665 - 426252 | 22005.4 |
| hypothetical protein | SAMN04488036_10529 | Not Available | Positive | 426384 - 426626 | 8659.39 |
| homoserine dehydrogenase | SAMN04488036_10530 | Not Available | Positive | 426710 - 428008 | 44980.2 |
| fructose-1,6-bisphosphatase ii / sedoheptulose-1,7-bisphosphatase | SAMN04488036_10531 | Not Available | Positive | 428096 - 429070 | 34347.3 |
| single-stranded-dna-specific exonuclease | SAMN04488036_10532 | Not Available | Positive | 429157 - 430899 | 60957.1 |
| ca2+-transporting atpase | SAMN04488036_10533 | Not Available | Positive | 431145 - 433880 | 97480.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
