Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsenite transporter, acr3 family | SAMN04488036_10514 | Not Available | Negative | 413022 - 414071 | 37286.9 |
| transcriptional regulator, arsr family | SAMN04488036_10515 | Not Available | Negative | 414074 - 414415 | 12100.6 |
| lrp/asnc family transcriptional regulator | SAMN04488036_10516 | Not Available | Negative | 414492 - 414980 | 18510.5 |
| selenocysteine lyase/cysteine desulfurase | SAMN04488036_10517 | Not Available | Positive | 415102 - 416505 | 50023.4 |
| uncharacterized domain 1-containing protein | SAMN04488036_10518 | Not Available | Negative | 416515 - 416934 | 15191.2 |
| pseudoazurin | SAMN04488036_10519 | Not Available | Positive | 417148 - 417585 | 15747.3 |
| peptidase propeptide and ypeb domain-containing protein | SAMN04488036_10520 | Not Available | Negative | 417721 - 418053 | 11696.5 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN04488036_10521 | Not Available | Negative | 418173 - 418958 | 27596.2 |
| predicted kinase, aminoglycoside phosphotransferase (apt) family | SAMN04488036_10522 | Not Available | Negative | 418951 - 419976 | 37555.7 |
| broad specificity phosphatase phoe | SAMN04488036_10523 | Not Available | Negative | 420010 - 420681 | 24415.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
