Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nodulation protein e | SAMN04488036_1054 | Not Available | Negative | 401207 - 402421 | 41416.7 |
| phosphopantetheine attachment site | SAMN04488036_1055 | Not Available | Negative | 402423 - 402686 | 9831.67 |
| rhodanese-related sulfurtransferase | SAMN04488036_1056 | Not Available | Negative | 402883 - 403275 | 13558.2 |
| hypothetical protein | SAMN04488036_1057 | Not Available | Positive | 403978 - 404232 | 9032.88 |
| deoxycytidine triphosphate deaminase | SAMN04488036_1058 | Not Available | Negative | 404233 - 404868 | 23727.6 |
| gtp-binding protein lepa | SAMN04488036_1059 | Not Available | Negative | 405703 - 407553 | 68801.9 |
| hypothetical protein | SAMN04488036_10510 | Not Available | Positive | 407794 - 408768 | 35206.1 |
| adenylate cyclase, class 3 | SAMN04488036_10511 | Not Available | Positive | 408907 - 410565 | 60707.2 |
| hypothetical protein | SAMN04488036_10512 | Not Available | Negative | 410573 - 411829 | 44586.4 |
| glyceraldehyde 3-phosphate dehydrogenase | SAMN04488036_10513 | Not Available | Negative | 411882 - 412892 | 36769.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
