Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide export system protein lptc | SAMN04488036_104375 | Not Available | Negative | 389590 - 390204 | 21758.0 |
| arabinose-5-phosphate isomerase | SAMN04488036_104376 | Not Available | Negative | 390211 - 391185 | 33987.1 |
| ribonuclease d | SAMN04488036_104377 | Not Available | Negative | 391185 - 391796 | 22722.3 |
| hypothetical protein | SAMN04488036_104378 | Not Available | Positive | 391856 - 392680 | 31001.3 |
| hypothetical protein | SAMN04488036_104380 | Not Available | Positive | 393321 - 394046 | 26873.2 |
| hypothetical protein | SAMN04488036_104381 | Not Available | Negative | 394298 - 395785 | 56022.6 |
| putative transposase | SAMN04488036_104382 | Not Available | Positive | 395915 - 396181 | 10170.4 |
| abc-type multidrug transport system, atpase and permease component | SAMN04488036_1051 | Not Available | Negative | 396765 - 399800 | 112071.0 |
| protein of unknown function | SAMN04488036_1052 | Not Available | Positive | 400037 - 400417 | 14600.2 |
| maoc like domain-containing protein | SAMN04488036_1053 | Not Available | Negative | 400429 - 401220 | 28163.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
