Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| molecular chaperone dnak | SAMN04488036_104355 | Not Available | Negative | 368016 - 369929 | 68546.0 |
| alkylated dna repair protein (dna oxidative demethylase) | SAMN04488036_104356 | Not Available | Positive | 370137 - 370745 | 22340.8 |
| sh3 domain-containing protein | SAMN04488036_104357 | Not Available | Negative | 370782 - 371372 | 21101.7 |
| abc-type polysaccharide/polyol phosphate export permease | SAMN04488036_104358 | Not Available | Negative | 371369 - 372190 | 30340.1 |
| 3'(2'),5'-bisphosphate nucleotidase | SAMN04488036_104359 | Not Available | Positive | 372310 - 373107 | 28824.8 |
| 3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase) | SAMN04488036_104360 | Not Available | Positive | 373107 - 373907 | 29107.3 |
| glycosyltransferase like family 2 | SAMN04488036_104361 | Not Available | Positive | 373904 - 375151 | 46508.0 |
| udp-glucuronate 4-epimerase | SAMN04488036_104362 | Not Available | Positive | 375167 - 376192 | 37949.3 |
| ndp-sugar epimerase, includes udp-glcnac-inverting 4,6-dehydratase flaa1 and capsular polysaccharide biosynthesis protein epsc | SAMN04488036_104363 | Not Available | Negative | 376193 - 378082 | 68980.2 |
| polysaccharide export outer membrane protein | SAMN04488036_104364 | Not Available | Positive | 378428 - 379528 | 39936.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
