Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate n-acetyltransferase | SAMN04488036_104345 | Not Available | Negative | 356441 - 357667 | 42284.9 |
| peptidyl-prolyl cis-trans isomerase c | SAMN04488036_104346 | Not Available | Negative | 357670 - 358539 | 30889.3 |
| protein translocase subunit seca | SAMN04488036_104347 | Not Available | Positive | 358712 - 361423 | 100946.0 |
| hypothetical protein | SAMN04488036_104348 | Not Available | Positive | 361518 - 362537 | 35553.4 |
| phosphate abc transporter substrate-binding protein, phot family | SAMN04488036_104349 | Not Available | Positive | 362559 - 364112 | 56147.6 |
| dna repair protein radc | SAMN04488036_104350 | Not Available | Negative | 364115 - 364813 | 25605.9 |
| hypothetical protein | SAMN04488036_104351 | Not Available | Positive | 364907 - 365056 | 5557.66 |
| glutamate/aspartate transport system substrate-binding protein | SAMN04488036_104352 | Not Available | Positive | 365114 - 365965 | 30362.8 |
| hypothetical protein | SAMN04488036_104353 | Not Available | Positive | 366268 - 366732 | 17346.5 |
| molecular chaperone dnaj | SAMN04488036_104354 | Not Available | Negative | 366791 - 367936 | 40514.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
