Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, marr family | SAMN04488036_104335 | Not Available | Positive | 346420 - 346860 | 16411.9 |
| 3-demethylubiquinone-9 3-methyltransferase | SAMN04488036_104336 | Not Available | Negative | 346857 - 347600 | 27086.4 |
| proline iminopeptidase | SAMN04488036_104337 | Not Available | Positive | 347651 - 348625 | 36441.3 |
| peptide/nickel transport system substrate-binding protein | SAMN04488036_104338 | Not Available | Positive | 348705 - 350180 | 52825.5 |
| ribosome maturation factor rimp | SAMN04488036_104339 | Not Available | Positive | 350324 - 350914 | 21403.3 |
| nusa antitermination factor | SAMN04488036_104340 | Not Available | Positive | 350920 - 352545 | 60327.2 |
| hypothetical protein | SAMN04488036_104341 | Not Available | Positive | 352569 - 353201 | 22370.0 |
| bacterial translation initiation factor 2 (bif-2) | SAMN04488036_104342 | Not Available | Positive | 353198 - 355693 | 89392.5 |
| hypothetical protein | SAMN04488036_104343 | Not Available | Negative | 355744 - 355881 | 4686.86 |
| 8-oxo-dgtp diphosphatase | SAMN04488036_104344 | Not Available | Negative | 356046 - 356360 | 11999.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
