Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (uracil1939-c5)-methyltransferase | SAMN04488036_104325 | Not Available | Positive | 339139 - 340353 | 43333.0 |
| l,d-transpeptidase catalytic domain | SAMN04488036_104326 | Not Available | Positive | 340442 - 340936 | 18490.1 |
| uncharacterized conserved protein ykwd, contains cap (csp/antigen 5/pr1) domain | SAMN04488036_104327 | Not Available | Negative | 340937 - 341497 | 20381.8 |
| l,d-transpeptidase catalytic domain | SAMN04488036_104328 | Not Available | Positive | 341633 - 342229 | 22317.4 |
| hypothetical protein | SAMN04488036_104329 | Not Available | Positive | 342382 - 342564 | 5906.24 |
| ferrochelatase | SAMN04488036_104330 | Not Available | Negative | 342646 - 343701 | 39955.2 |
| hypothetical protein | SAMN04488036_104331 | Not Available | Negative | 343728 - 344546 | 30034.3 |
| predicted amidophosphoribosyltransferases | SAMN04488036_104332 | Not Available | Positive | 344559 - 345293 | 26293.1 |
| glutaredoxin 3 | SAMN04488036_104333 | Not Available | Positive | 345330 - 345584 | 9296.25 |
| predicted amidohydrolase | SAMN04488036_104334 | Not Available | Positive | 345590 - 346420 | 29755.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
