Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate synthase | SAMN04488036_104315 | Not Available | Negative | 328589 - 329821 | 45532.2 |
| hypothetical protein | SAMN04488036_104316 | Not Available | Positive | 329971 - 330702 | 26168.6 |
| l-threonine ammonia-lyase | SAMN04488036_104317 | Not Available | Positive | 330783 - 331979 | 43430.8 |
| hpt domain-containing protein | SAMN04488036_104318 | Not Available | Negative | 331984 - 332307 | 11637.5 |
| serine phosphatase rsbu, regulator of sigma subunit | SAMN04488036_104319 | Not Available | Positive | 332459 - 333727 | 46546.4 |
| 8-oxo-dgtp diphosphatase | SAMN04488036_104320 | Not Available | Negative | 333724 - 334161 | 16390.7 |
| molecular chaperone hsp33 | SAMN04488036_104321 | Not Available | Positive | 334240 - 335241 | 36176.7 |
| nudix domain-containing protein | SAMN04488036_104322 | Not Available | Positive | 335234 - 335833 | 21863.3 |
| poly(a) polymerase | SAMN04488036_104323 | Not Available | Positive | 335830 - 336990 | 41320.6 |
| atp-binding cassette, subfamily b, multidrug efflux pump | SAMN04488036_104324 | Not Available | Positive | 337261 - 339102 | 67489.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
