Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serralysin | SAMN04488036_104305 | Not Available | Negative | 318008 - 320548 | 86354.4 |
| hypothetical protein | SAMN04488036_104306 | Not Available | Negative | 320596 - 321066 | 16925.2 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488036_104307 | Not Available | Negative | 321238 - 322191 | 34557.9 |
| protein of unknown function | SAMN04488036_104308 | Not Available | Positive | 322369 - 323454 | 37986.2 |
| hypothetical protein | SAMN04488036_104309 | Not Available | Positive | 323466 - 323765 | 10871.0 |
| udpglucose 6-dehydrogenase | SAMN04488036_104310 | Not Available | Negative | 323762 - 324928 | 42701.5 |
| scp-2 sterol transfer family protein | SAMN04488036_104311 | Not Available | Negative | 325041 - 325322 | 9976.27 |
| outer membrane protein, multidrug efflux system | SAMN04488036_104312 | Not Available | Negative | 325402 - 326466 | 38533.3 |
| hypothetical protein | SAMN04488036_104313 | Not Available | Negative | 326611 - 326736 | 4334.16 |
| mechanosensitive ion channel | SAMN04488036_104314 | Not Available | Negative | 326769 - 328427 | 61268.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
