Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system protein i | SAMN04488036_104295 | Not Available | Negative | 306443 - 306838 | 13701.6 |
| general secretion pathway protein g | SAMN04488036_104296 | Not Available | Negative | 307281 - 307733 | 15997.7 |
| type iv leader peptidase family protein | SAMN04488036_104297 | Not Available | Positive | 308096 - 308617 | 18074.1 |
| tpr repeat | SAMN04488036_104298 | Not Available | Positive | 308716 - 310251 | 54070.4 |
| hypothetical protein | SAMN04488036_104299 | Not Available | Positive | 310251 - 311396 | 41022.7 |
| hypothetical protein | SAMN04488036_104300 | Not Available | Positive | 311538 - 311969 | 15610.3 |
| chaperone of endosialidase | SAMN04488036_104301 | Not Available | Positive | 312025 - 313269 | 43814.8 |
| sulfotransferase domain-containing protein | SAMN04488036_104302 | Not Available | Negative | 313326 - 314084 | 29404.3 |
| sulfotransferase family protein | SAMN04488036_104303 | Not Available | Negative | 314081 - 314803 | 26960.2 |
| uncharacterized membrane protein yraq, upf0718 family | SAMN04488036_104304 | Not Available | Positive | 314906 - 317962 | 109291.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
