Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase | SAMN04488036_104285 | Not Available | Positive | 295972 - 297237 | 45446.8 |
| general secretion pathway protein f | SAMN04488036_104286 | Not Available | Negative | 297259 - 298473 | 43405.4 |
| type ii secretion system protein e (gspe) | SAMN04488036_104287 | Not Available | Negative | 298470 - 299984 | 54229.8 |
| general secretion pathway protein d | SAMN04488036_104288 | Not Available | Negative | 299926 - 301863 | 68729.8 |
| hypothetical protein | SAMN04488036_104289 | Not Available | Negative | 302102 - 302590 | 17590.1 |
| hypothetical protein | SAMN04488036_104290 | Not Available | Positive | 302727 - 303260 | 18323.5 |
| type ii secretory pathway, component pulm | SAMN04488036_104291 | Not Available | Negative | 303270 - 303761 | 17831.6 |
| type ii secretion system protein l | SAMN04488036_104292 | Not Available | Negative | 303758 - 304891 | 40437.4 |
| type ii secretory pathway, component pulk | SAMN04488036_104293 | Not Available | Negative | 304888 - 305790 | 33024.1 |
| type ii secretion system protein j | SAMN04488036_104294 | Not Available | Negative | 305787 - 306446 | 23108.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
