Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| capsular polysaccharide transport system permease protein | SAMN04488036_104275 | Not Available | Negative | 285026 - 285823 | 29934.3 |
| hypothetical protein | SAMN04488036_104276 | Not Available | Negative | 285850 - 286200 | 12554.6 |
| capsular polysaccharide transport system permease protein | SAMN04488036_104277 | Not Available | Positive | 286210 - 287280 | 40743.2 |
| capsular polysaccharide transport system atp-binding protein | SAMN04488036_104278 | Not Available | Positive | 287277 - 287963 | 25261.3 |
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN04488036_104279 | Not Available | Negative | 288119 - 288721 | 22785.1 |
| hypothetical protein | SAMN04488036_104280 | Not Available | Positive | 288928 - 289893 | 36419.4 |
| core-2/i-branching enzyme | SAMN04488036_104281 | Not Available | Positive | 289928 - 290872 | 36004.9 |
| sulfotransferase family protein | SAMN04488036_104282 | Not Available | Positive | 290872 - 291576 | 27040.6 |
| sulfotransferase family protein | SAMN04488036_104283 | Not Available | Negative | 291580 - 292170 | 21933.2 |
| glycosyltransferase, gt2 family | SAMN04488036_104284 | Not Available | Negative | 292314 - 295514 | 118919.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
