Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose 3,5-epimerase | SAMN04488036_104265 | Not Available | Positive | 273813 - 274370 | 20380.8 |
| dtdp-glucose 4,6-dehydratase | SAMN04488036_104266 | Not Available | Positive | 274376 - 275425 | 38688.2 |
| sulfotransferase family protein | SAMN04488036_104267 | Not Available | Positive | 275431 - 276093 | 24931.2 |
| dtdp-4-dehydrorhamnose reductase | SAMN04488036_104268 | Not Available | Positive | 276065 - 276943 | 30717.1 |
| glucose-1-phosphate thymidylyltransferase | SAMN04488036_104269 | Not Available | Positive | 276945 - 277820 | 32039.3 |
| sulfotransferase family protein | SAMN04488036_104270 | Not Available | Negative | 277824 - 278687 | 34400.8 |
| sulfotransferase domain-containing protein | SAMN04488036_104271 | Not Available | Negative | 278736 - 279440 | 26669.3 |
| ca2+-binding protein, rtx toxin-related | SAMN04488036_104272 | Not Available | Negative | 279558 - 282233 | 89635.6 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488036_104273 | Not Available | Positive | 282484 - 283800 | 49602.4 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488036_104274 | Not Available | Positive | 283797 - 285029 | 46140.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
