Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
840910 bp
Thymine Count
835965 bp
Guanine Count
1149776 bp
Cytosine Count
1169318 bp
Genome Length
3995969 bp
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system, response regulator rega | SAMN04488036_104255 | Not Available | Positive | 265565 - 266119 | 20381.5 |
| leucine dehydrogenase | SAMN04488036_104256 | Not Available | Negative | 266267 - 267313 | 36338.3 |
| transcriptional regulator, asnc family | SAMN04488036_104257 | Not Available | Positive | 267459 - 267914 | 16668.4 |
| l-amino acid n-acyltransferase ynca | SAMN04488036_104258 | Not Available | Negative | 267911 - 268363 | 16623.8 |
| metal dependent phosphohydrolase | SAMN04488036_104259 | Not Available | Negative | 268451 - 269014 | 20681.9 |
| hypothetical protein | SAMN04488036_104260 | Not Available | Positive | 269343 - 269675 | 11778.2 |
| adenosylhomocysteinase | SAMN04488036_104261 | Not Available | Positive | 269734 - 271116 | 50022.9 |
| peptide-methionine (s)-s-oxide reductase | SAMN04488036_104262 | Not Available | Negative | 271189 - 271851 | 23743.2 |
| branched-chain amino acid aminotransferase | SAMN04488036_104263 | Not Available | Positive | 272015 - 272929 | 33285.9 |
| hypothetical protein | SAMN04488036_104264 | Not Available | Positive | 272983 - 273696 | 26526.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
